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Contents
Contents
Facilitating Standardization and Exchange of Array Design
ADF Converter Specification
Draft version - 0.42.1h
EBI - Microarray group - 9 July 2004
By
Pierre MARGUERITE
Contents
List of Figures
Introduction
Context
Array design data
Array Design File - ADF
MAGE-ML:
Controlled vocabulary
The ADF Converter application:
Application running mode
ADF Converter application functionalities and project objectives
The checking step
ADF check
Automatic curation
MAGE-ML check
Error report
The conversion step
ADF to MAGE-ML conversion
MAGE-ML to ADF conversion
Additional functionalities
Array design data visualisation
ADF creator helper
User modes
Command-line
Graphical user interface (G.U.I.)
Conclusion
Bibliography
Annexes
ADF specification
ADF items
item names :
Item information :
Header item (see figure A.2.1)
Feature and Reporter file(see figures A.2,A.3, A.4 and A.5)
CompositeSequence item information (see figures A.6 and A.7
Usual mistakes :
ADF checking list :
File structure checklist :
Data checklist :
About this document ...
PierreMarguerite-EBI,pierre@ebi.ac.uk
