Class Hierarchy (ADF MAGE-ML Tool)

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Package Hierarchies:: uk.ac.ebi.adfconverter.common.configuration, uk.ac.ebi.adfconverter.common.configuration.exceptions, uk.ac.ebi.adfconverter.common.data, uk.ac.ebi.adfconverter.common.data.tabulardata, uk.ac.ebi.adfconverter.common.data.tabulardata.exceptions, uk.ac.ebi.adfconverter.common.tools.file.archives, uk.ac.ebi.adfconverter.common.tools.file.converter, uk.ac.ebi.adfconverter.common.tools.file.copier, uk.ac.ebi.adfconverter.common.tools.file.copier.exceptions, uk.ac.ebi.adfconverter.common.tools.file.description, uk.ac.ebi.adfconverter.common.tools.file.filesystem, uk.ac.ebi.adfconverter.common.tools.file.reader, uk.ac.ebi.adfconverter.common.tools.file.reader.exceptions, uk.ac.ebi.adfconverter.common.tools.file.writer, uk.ac.ebi.adfconverter.common.tools.log, uk.ac.ebi.adfconverter.common.tools.log.exceptions, uk.ac.ebi.adfconverter.common.tools.net.mail, uk.ac.ebi.adfconverter.common.tools.net.update, uk.ac.ebi.adfconverter.common.tools.regex, uk.ac.ebi.adfconverter.common.util.pool, uk.ac.ebi.adfconverter.data.adf, uk.ac.ebi.adfconverter.library, uk.ac.ebi.adfconverter.library.exceptions, uk.ac.ebi.adfconverter.tools.checker, uk.ac.ebi.adfconverter.tools.checker.data, uk.ac.ebi.adfconverter.tools.checker.data.impl, uk.ac.ebi.adfconverter.tools.checker.data.impl.runtime, uk.ac.ebi.adfconverter.tools.checker.exceptions, uk.ac.ebi.adfconverter.tools.checker.ontology, uk.ac.ebi.adfconverter.tools.checker.ontology.exceptions, uk.ac.ebi.adfconverter.tools.converter, uk.ac.ebi.adfconverter.tools.converter.IdentifierGenerater, uk.ac.ebi.adfconverter.tools.exporter, uk.ac.ebi.adfconverter.tools.exporter.exceptions, uk.ac.ebi.adfconverter.tools.filestructure, uk.ac.ebi.adfconverter.tools.monitor, uk.ac.ebi.adfconverter.tools.networking, uk.ac.ebi.adfconverter.usermode.commandline, uk.ac.ebi.adfconverter.usermode.gui, uk.ac.ebi.adfconverter.usermode.gui.check, uk.ac.ebi.adfconverter.usermode.gui.visualisation

Class Hierarchy

class java.lang.Object
- class uk.ac.ebi.adfconverter.tools.checker.AbstractFileChecker
- class AbstractMarshallerImpl
  - class uk.ac.ebi.adfconverter.tools.checker.data.impl.runtime.MarshallerImpl
- class javax.swing.table.AbstractTableModel (implements java.io.Serializable, javax.swing.table.TableModel)
  - class uk.ac.ebi.adfconverter.usermode.gui.visualisation.DataTableModel
- class AbstractUnmarshallerImpl
  - class uk.ac.ebi.adfconverter.tools.checker.data.impl.runtime.UnmarshallerImpl
- class uk.ac.ebi.adfconverter.tools.checker.data.impl.runtime.AbstractUnmarshallingEventHandlerImpl (implements uk.ac.ebi.adfconverter.tools.checker.data.impl.runtime.UnmarshallingEventHandler)
  - class uk.ac.ebi.adfconverter.tools.checker.data.impl.CardinalityTypeImpl.Unmarshaller
  - class uk.ac.ebi.adfconverter.tools.checker.data.impl.CheckRuleTypeImpl.Unmarshaller
  - class uk.ac.ebi.adfconverter.tools.checker.data.impl.ConstraintTypeImpl.Unmarshaller
  - class uk.ac.ebi.adfconverter.tools.checker.data.impl.DataTypeImpl.TablesTypeImpl.Unmarshaller
  - class uk.ac.ebi.adfconverter.tools.checker.data.impl.DataTypeImpl.Unmarshaller
  - class uk.ac.ebi.adfconverter.tools.checker.data.impl.DocumentStructureImpl.Unmarshaller
  - class uk.ac.ebi.adfconverter.tools.checker.data.impl.DocumentStructureTypeImpl.FilesTypeImpl.Unmarshaller
  - class uk.ac.ebi.adfconverter.tools.checker.data.impl.DocumentStructureTypeImpl.Unmarshaller
  - class uk.ac.ebi.adfconverter.tools.checker.data.impl.FieldTypeImpl.ConstraintsTypeImpl.Unmarshaller
  - class uk.ac.ebi.adfconverter.tools.checker.data.impl.FieldTypeImpl.Unmarshaller
  - class uk.ac.ebi.adfconverter.tools.checker.data.impl.FilerImpl.Unmarshaller
  - class uk.ac.ebi.adfconverter.tools.checker.data.impl.FileTypeImpl.DataSetTypeImpl.Unmarshaller
  - class uk.ac.ebi.adfconverter.tools.checker.data.impl.FileTypeImpl.Unmarshaller
  - class uk.ac.ebi.adfconverter.tools.checker.data.impl.HeaderImpl.Unmarshaller
  - class uk.ac.ebi.adfconverter.tools.checker.data.impl.HeaderTypeImpl.ItemsTypeImpl.Unmarshaller
  - class uk.ac.ebi.adfconverter.tools.checker.data.impl.HeaderTypeImpl.Unmarshaller
  - class uk.ac.ebi.adfconverter.tools.checker.data.impl.ItemTempImpl.Unmarshaller
  - class uk.ac.ebi.adfconverter.tools.checker.data.impl.ItemTypeImpl.FieldDependenceTypeImpl.Unmarshaller
  - class uk.ac.ebi.adfconverter.tools.checker.data.impl.ItemTypeImpl.RelaxCheckRulesTypeImpl.Unmarshaller
  - class uk.ac.ebi.adfconverter.tools.checker.data.impl.ItemTypeImpl.SubNamesTypeImpl.Unmarshaller
  - class uk.ac.ebi.adfconverter.tools.checker.data.impl.ItemTypeImpl.Unmarshaller
  - class uk.ac.ebi.adfconverter.tools.checker.data.impl.LocationTypeImpl.PreviousColumnsTypeImpl.Unmarshaller
  - class uk.ac.ebi.adfconverter.tools.checker.data.impl.LocationTypeImpl.Unmarshaller
  - class uk.ac.ebi.adfconverter.tools.checker.data.impl.SubNameTypeImpl.ConstraintsTypeImpl.Unmarshaller
  - class uk.ac.ebi.adfconverter.tools.checker.data.impl.SubNameTypeImpl.Unmarshaller
  - class uk.ac.ebi.adfconverter.tools.checker.data.impl.TableTypeImpl.Unmarshaller
- class uk.ac.ebi.adfconverter.usermode.commandline.ADFConverterCommandLine
- class uk.ac.ebi.adfconverter.common.configuration.ADFConverterConfiguration
- class uk.ac.ebi.adfconverter.common.tools.file.reader.ADFConverterFileReaderImpl (implements uk.ac.ebi.adfconverter.common.tools.file.reader.ADFConverterFileReader)
  - class uk.ac.ebi.adfconverter.common.tools.file.reader.PlainTextFileReader
    - class uk.ac.ebi.adfconverter.common.tools.file.reader.PlainTextDataFileReader (implements uk.ac.ebi.adfconverter.common.tools.file.reader.DataReader)
  - class uk.ac.ebi.adfconverter.common.tools.file.reader.WorkBookFileReaderjxl (implements uk.ac.ebi.adfconverter.common.tools.file.reader.DataReader)
- class uk.ac.ebi.adfconverter.common.tools.file.writer.ADFConverterFileWriterImpl (implements uk.ac.ebi.adfconverter.common.tools.file.writer.ADFConverterFileWriter)
  - class uk.ac.ebi.adfconverter.common.tools.file.writer.PlainTextFileWriter
    - class uk.ac.ebi.adfconverter.common.tools.file.writer.PlainTextDataFileWriter (implements uk.ac.ebi.adfconverter.common.tools.file.writer.DataWriter)
  - class uk.ac.ebi.adfconverter.common.tools.file.writer.WorkBookFileWriterjxl (implements uk.ac.ebi.adfconverter.common.tools.file.writer.DataWriter)
- class uk.ac.ebi.adfconverter.library.ADFConverterLibrary
- class uk.ac.ebi.adfconverter.common.tools.log.ADFConverterLoggerImpl (implements uk.ac.ebi.adfconverter.common.tools.log.ADFConverterLogger)
- class uk.ac.ebi.adfconverter.tools.networking.ADFConverterNetwork
- class uk.ac.ebi.adfconverter.common.tools.net.mail.ADFConverterSendMail
- class uk.ac.ebi.adfconverter.tools.exporter.ADFExporter
- class uk.ac.ebi.adfconverter.data.adf.ADFGroup
  - class uk.ac.ebi.adfconverter.data.adf.ADFCompositeSequenceGroup
  - class uk.ac.ebi.adfconverter.data.adf.ADFReporterGroup
- class uk.ac.ebi.adfconverter.data.adf.ADFJava
- class uk.ac.ebi.adfconverter.tools.converter.ADFToMAGEConverter
- class uk.ac.ebi.adfconverter.tools.checker.Cardinality
- class uk.ac.ebi.adfconverter.tools.checker.data.impl.CardinalityTypeImpl (implements uk.ac.ebi.adfconverter.tools.checker.data.CardinalityType, uk.ac.ebi.adfconverter.tools.checker.data.impl.runtime.UnmarshallableObject, uk.ac.ebi.adfconverter.tools.checker.data.impl.runtime.ValidatableObject, uk.ac.ebi.adfconverter.tools.checker.data.impl.runtime.XMLSerializable)
- class uk.ac.ebi.adfconverter.tools.checker.data.impl.CheckRuleTypeImpl (implements uk.ac.ebi.adfconverter.tools.checker.data.CheckRuleType, uk.ac.ebi.adfconverter.tools.checker.data.impl.runtime.UnmarshallableObject, uk.ac.ebi.adfconverter.tools.checker.data.impl.runtime.ValidatableObject, uk.ac.ebi.adfconverter.tools.checker.data.impl.runtime.XMLSerializable)
- class java.awt.Component (implements java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable)
  - class java.awt.Container
    - class javax.swing.JComponent (implements java.io.Serializable)
      - class javax.swing.JInternalFrame (implements javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants)
        
        class uk.ac.ebi.adfconverter.usermode.gui.MyFrame
      - class javax.swing.JLayeredPane (implements javax.accessibility.Accessible)
        
        class javax.swing.JDesktopPane (implements javax.accessibility.Accessible)
        
        class uk.ac.ebi.adfconverter.usermode.gui.ADFCconverterGUI
      - class javax.swing.JTabbedPane (implements javax.accessibility.Accessible, java.io.Serializable, javax.swing.SwingConstants)
        
        class uk.ac.ebi.adfconverter.usermode.gui.visualisation.SeveralTablesVisualisation
      - class javax.swing.JTable (implements javax.accessibility.Accessible, javax.swing.event.CellEditorListener, javax.swing.event.ListSelectionListener, javax.swing.Scrollable, javax.swing.event.TableColumnModelListener, javax.swing.event.TableModelListener)
        
        class uk.ac.ebi.adfconverter.usermode.gui.visualisation.DataVisualisationTable
    - class java.awt.Window (implements javax.accessibility.Accessible)
      - class java.awt.Frame (implements java.awt.MenuContainer)
        
        class javax.swing.JFrame (implements javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants)
        
        class uk.ac.ebi.adfconverter.usermode.gui.test1
- class uk.ac.ebi.adfconverter.tools.checker.data.impl.ConstraintTypeImpl (implements uk.ac.ebi.adfconverter.tools.checker.data.ConstraintType, uk.ac.ebi.adfconverter.tools.checker.data.impl.runtime.UnmarshallableObject, uk.ac.ebi.adfconverter.tools.checker.data.impl.runtime.ValidatableObject, uk.ac.ebi.adfconverter.tools.checker.data.impl.runtime.XMLSerializable)
- class uk.ac.ebi.adfconverter.tools.checker.data.impl.runtime.ContentHandlerAdaptor (implements org.xml.sax.ContentHandler)
- class uk.ac.ebi.adfconverter.common.tools.regex.ConvertRegex
- class uk.ac.ebi.adfconverter.common.util.pool.CorrectableDataTablePool
- class uk.ac.ebi.adfconverter.common.util.pool.CorrectableHeaderItemPool
- class uk.ac.ebi.adfconverter.tools.checker.DatabaseChecker
- class uk.ac.ebi.adfconverter.common.data.DataBuffer
- class uk.ac.ebi.adfconverter.common.util.pool.DataBufferPool
- class uk.ac.ebi.adfconverter.usermode.gui.visualisation.DataDisplay
- class uk.ac.ebi.adfconverter.common.tools.file.reader.DataFileReaderIntf
  - class uk.ac.ebi.adfconverter.common.tools.file.reader.DataFileReader
- class uk.ac.ebi.adfconverter.common.tools.file.writer.DataFileWriter
- class uk.ac.ebi.adfconverter.common.data.tabulardata.DataRow
  - class uk.ac.ebi.adfconverter.data.adf.ADFBioSequence
  - class uk.ac.ebi.adfconverter.data.adf.ADFDesignElement
    - class uk.ac.ebi.adfconverter.data.adf.ADFCompositeSequence
    - class uk.ac.ebi.adfconverter.data.adf.ADFReporter
  - class uk.ac.ebi.adfconverter.data.adf.ADFFeature
- class uk.ac.ebi.adfconverter.common.util.pool.DataRowPool
- class uk.ac.ebi.adfconverter.common.data.tabulardata.DataTable
  - class uk.ac.ebi.adfconverter.common.data.tabulardata.CorrectableDataTable
- class uk.ac.ebi.adfconverter.common.data.tabulardata.DataTableHeader
  - class uk.ac.ebi.adfconverter.common.data.tabulardata.CorrectableDataTableHeader
- class uk.ac.ebi.adfconverter.common.util.pool.DataTablePool
- class uk.ac.ebi.adfconverter.tools.checker.data.impl.DataTypeImpl (implements uk.ac.ebi.adfconverter.tools.checker.data.DataType, uk.ac.ebi.adfconverter.tools.checker.data.impl.runtime.UnmarshallableObject, uk.ac.ebi.adfconverter.tools.checker.data.impl.runtime.ValidatableObject, uk.ac.ebi.adfconverter.tools.checker.data.impl.runtime.XMLSerializable)
- class uk.ac.ebi.adfconverter.tools.checker.data.impl.DataTypeImpl.TablesTypeImpl (implements uk.ac.ebi.adfconverter.tools.checker.data.DataType.TablesType, uk.ac.ebi.adfconverter.tools.checker.data.impl.runtime.UnmarshallableObject, uk.ac.ebi.adfconverter.tools.checker.data.impl.runtime.ValidatableObject, uk.ac.ebi.adfconverter.tools.checker.data.impl.runtime.XMLSerializable)
- class uk.ac.ebi.adfconverter.common.tools.file.converter.DelimiterLineConverter
- class uk.ac.ebi.adfconverter.library.DirectoryFilter (implements java.io.FilenameFilter)
- class uk.ac.ebi.adfconverter.common.tools.file.filesystem.DiskUtil
- class uk.ac.ebi.adfconverter.tools.checker.data.impl.DocumentStructureTypeImpl (implements uk.ac.ebi.adfconverter.tools.checker.data.DocumentStructureType, uk.ac.ebi.adfconverter.tools.checker.data.impl.runtime.UnmarshallableObject, uk.ac.ebi.adfconverter.tools.checker.data.impl.runtime.ValidatableObject, uk.ac.ebi.adfconverter.tools.checker.data.impl.runtime.XMLSerializable)
  - class uk.ac.ebi.adfconverter.tools.checker.data.impl.DocumentStructureImpl (implements uk.ac.ebi.adfconverter.tools.checker.data.DocumentStructure, uk.ac.ebi.adfconverter.tools.checker.data.impl.runtime.UnmarshallableObject, uk.ac.ebi.adfconverter.tools.checker.data.impl.runtime.ValidatableObject, uk.ac.ebi.adfconverter.tools.checker.data.impl.runtime.XMLSerializable)
- class uk.ac.ebi.adfconverter.tools.checker.data.impl.DocumentStructureTypeImpl.FilesTypeImpl (implements uk.ac.ebi.adfconverter.tools.checker.data.DocumentStructureType.FilesType, uk.ac.ebi.adfconverter.tools.checker.data.impl.runtime.UnmarshallableObject, uk.ac.ebi.adfconverter.tools.checker.data.impl.runtime.ValidatableObject, uk.ac.ebi.adfconverter.tools.checker.data.impl.runtime.XMLSerializable)
- class uk.ac.ebi.adfconverter.tools.checker.data.impl.runtime.ErrorHandlerAdaptor (implements org.xml.sax.ErrorHandler)
- class uk.ac.ebi.adfconverter.common.tools.net.update.Fetch
- class uk.ac.ebi.adfconverter.tools.checker.data.impl.FieldTypeImpl (implements uk.ac.ebi.adfconverter.tools.checker.data.FieldType, uk.ac.ebi.adfconverter.tools.checker.data.impl.runtime.UnmarshallableObject, uk.ac.ebi.adfconverter.tools.checker.data.impl.runtime.ValidatableObject, uk.ac.ebi.adfconverter.tools.checker.data.impl.runtime.XMLSerializable)
- class uk.ac.ebi.adfconverter.tools.checker.data.impl.FieldTypeImpl.ConstraintsTypeImpl (implements uk.ac.ebi.adfconverter.tools.checker.data.FieldType.ConstraintsType, uk.ac.ebi.adfconverter.tools.checker.data.impl.runtime.UnmarshallableObject, uk.ac.ebi.adfconverter.tools.checker.data.impl.runtime.ValidatableObject, uk.ac.ebi.adfconverter.tools.checker.data.impl.runtime.XMLSerializable)
- class uk.ac.ebi.adfconverter.tools.checker.FileChecker
  - class uk.ac.ebi.adfconverter.tools.checker.ADFChecker
- class uk.ac.ebi.adfconverter.usermode.gui.check.FileChecking
- class uk.ac.ebi.adfconverter.common.tools.file.copier.FileCopy
- class uk.ac.ebi.adfconverter.library.FileFilter (implements java.io.FilenameFilter)
- class uk.ac.ebi.adfconverter.common.tools.file.description.FileFormatDescription
  - class uk.ac.ebi.adfconverter.common.tools.file.description.SimpleFileFormatDescription
- class uk.ac.ebi.adfconverter.tools.filestructure.FileStructureDescription
- class uk.ac.ebi.adfconverter.tools.checker.data.impl.FileTypeImpl (implements uk.ac.ebi.adfconverter.tools.checker.data.FileType, uk.ac.ebi.adfconverter.tools.checker.data.impl.runtime.UnmarshallableObject, uk.ac.ebi.adfconverter.tools.checker.data.impl.runtime.ValidatableObject, uk.ac.ebi.adfconverter.tools.checker.data.impl.runtime.XMLSerializable)
  - class uk.ac.ebi.adfconverter.tools.checker.data.impl.FilerImpl (implements uk.ac.ebi.adfconverter.tools.checker.data.Filer, uk.ac.ebi.adfconverter.tools.checker.data.impl.runtime.UnmarshallableObject, uk.ac.ebi.adfconverter.tools.checker.data.impl.runtime.ValidatableObject, uk.ac.ebi.adfconverter.tools.checker.data.impl.runtime.XMLSerializable)
- class uk.ac.ebi.adfconverter.tools.checker.data.impl.FileTypeImpl.DataSetTypeImpl (implements uk.ac.ebi.adfconverter.tools.checker.data.FileType.DataSetType, uk.ac.ebi.adfconverter.tools.checker.data.impl.runtime.UnmarshallableObject, uk.ac.ebi.adfconverter.tools.checker.data.impl.runtime.ValidatableObject, uk.ac.ebi.adfconverter.tools.checker.data.impl.runtime.XMLSerializable)
- class ForkContentHandler
  - class uk.ac.ebi.adfconverter.tools.checker.data.impl.runtime.ValidatingUnmarshaller (implements uk.ac.ebi.adfconverter.tools.checker.data.impl.runtime.SAXUnmarshallerHandler)
- class uk.ac.ebi.adfconverter.common.tools.net.update.GetURLInfo
- class uk.ac.ebi.adfconverter.tools.checker.data.impl.runtime.GrammarInfoImpl (implements uk.ac.ebi.adfconverter.tools.checker.data.impl.runtime.GrammarInfo)
- class uk.ac.ebi.adfconverter.common.data.tabulardata.HeaderItem
  - class uk.ac.ebi.adfconverter.common.data.tabulardata.CorrectableHeaderItem
- class uk.ac.ebi.adfconverter.common.util.pool.HeaderItemPool
- class uk.ac.ebi.adfconverter.tools.checker.data.impl.HeaderTypeImpl (implements uk.ac.ebi.adfconverter.tools.checker.data.HeaderType, uk.ac.ebi.adfconverter.tools.checker.data.impl.runtime.UnmarshallableObject, uk.ac.ebi.adfconverter.tools.checker.data.impl.runtime.ValidatableObject, uk.ac.ebi.adfconverter.tools.checker.data.impl.runtime.XMLSerializable)
  - class uk.ac.ebi.adfconverter.tools.checker.data.impl.HeaderImpl (implements uk.ac.ebi.adfconverter.tools.checker.data.Header, uk.ac.ebi.adfconverter.tools.checker.data.impl.runtime.UnmarshallableObject, uk.ac.ebi.adfconverter.tools.checker.data.impl.runtime.ValidatableObject, uk.ac.ebi.adfconverter.tools.checker.data.impl.runtime.XMLSerializable)
- class uk.ac.ebi.adfconverter.tools.checker.data.impl.HeaderTypeImpl.ItemsTypeImpl (implements uk.ac.ebi.adfconverter.tools.checker.data.HeaderType.ItemsType, uk.ac.ebi.adfconverter.tools.checker.data.impl.runtime.UnmarshallableObject, uk.ac.ebi.adfconverter.tools.checker.data.impl.runtime.ValidatableObject, uk.ac.ebi.adfconverter.tools.checker.data.impl.runtime.XMLSerializable)
- class uk.ac.ebi.adfconverter.tools.checker.data.impl.ItemTypeImpl (implements uk.ac.ebi.adfconverter.tools.checker.data.ItemType, uk.ac.ebi.adfconverter.tools.checker.data.impl.runtime.UnmarshallableObject, uk.ac.ebi.adfconverter.tools.checker.data.impl.runtime.ValidatableObject, uk.ac.ebi.adfconverter.tools.checker.data.impl.runtime.XMLSerializable)
  - class uk.ac.ebi.adfconverter.tools.checker.data.impl.ItemTempImpl (implements uk.ac.ebi.adfconverter.tools.checker.data.ItemTemp, uk.ac.ebi.adfconverter.tools.checker.data.impl.runtime.UnmarshallableObject, uk.ac.ebi.adfconverter.tools.checker.data.impl.runtime.ValidatableObject, uk.ac.ebi.adfconverter.tools.checker.data.impl.runtime.XMLSerializable)
- class uk.ac.ebi.adfconverter.tools.checker.data.impl.ItemTypeImpl.FieldDependenceTypeImpl (implements uk.ac.ebi.adfconverter.tools.checker.data.ItemType.FieldDependenceType, uk.ac.ebi.adfconverter.tools.checker.data.impl.runtime.UnmarshallableObject, uk.ac.ebi.adfconverter.tools.checker.data.impl.runtime.ValidatableObject, uk.ac.ebi.adfconverter.tools.checker.data.impl.runtime.XMLSerializable)
- class uk.ac.ebi.adfconverter.tools.checker.data.impl.ItemTypeImpl.RelaxCheckRulesTypeImpl (implements uk.ac.ebi.adfconverter.tools.checker.data.ItemType.RelaxCheckRulesType, uk.ac.ebi.adfconverter.tools.checker.data.impl.runtime.UnmarshallableObject, uk.ac.ebi.adfconverter.tools.checker.data.impl.runtime.ValidatableObject, uk.ac.ebi.adfconverter.tools.checker.data.impl.runtime.XMLSerializable)
- class uk.ac.ebi.adfconverter.tools.checker.data.impl.ItemTypeImpl.SubNamesTypeImpl (implements uk.ac.ebi.adfconverter.tools.checker.data.ItemType.SubNamesType, uk.ac.ebi.adfconverter.tools.checker.data.impl.runtime.UnmarshallableObject, uk.ac.ebi.adfconverter.tools.checker.data.impl.runtime.ValidatableObject, uk.ac.ebi.adfconverter.tools.checker.data.impl.runtime.XMLSerializable)
- class JAXBContext
  - class uk.ac.ebi.adfconverter.tools.checker.data.impl.runtime.DefaultJAXBContextImpl
    - class uk.ac.ebi.adfconverter.tools.checker.data.ObjectFactory
- class uk.ac.ebi.adfconverter.tools.checker.data.impl.JAXBVersion
- class uk.ac.ebi.adfconverter.tools.checker.data.impl.LocationTypeImpl (implements uk.ac.ebi.adfconverter.tools.checker.data.LocationType, uk.ac.ebi.adfconverter.tools.checker.data.impl.runtime.UnmarshallableObject, uk.ac.ebi.adfconverter.tools.checker.data.impl.runtime.ValidatableObject, uk.ac.ebi.adfconverter.tools.checker.data.impl.runtime.XMLSerializable)
- class uk.ac.ebi.adfconverter.tools.checker.data.impl.LocationTypeImpl.PreviousColumnsTypeImpl (implements uk.ac.ebi.adfconverter.tools.checker.data.LocationType.PreviousColumnsType, uk.ac.ebi.adfconverter.tools.checker.data.impl.runtime.UnmarshallableObject, uk.ac.ebi.adfconverter.tools.checker.data.impl.runtime.ValidatableObject, uk.ac.ebi.adfconverter.tools.checker.data.impl.runtime.XMLSerializable)
- class uk.ac.ebi.adfconverter.tools.converter.IdentifierGenerater.MAGEIdentifierGenerator
- class uk.ac.ebi.adfconverter.tools.exporter.MAGEMLExporter
- class uk.ac.ebi.adfconverter.common.tools.file.reader.MAGEReader
- class uk.ac.ebi.adfconverter.tools.converter.MAGEToADFConverter
- class uk.ac.ebi.adfconverter.tools.monitor.MemMonitor
- class uk.ac.ebi.adfconverter.tools.monitor.MemMonitor.Data
- class uk.ac.ebi.adfconverter.tools.checker.ontology.MGEDOntologyChecker
- class uk.ac.ebi.adfconverter.tools.checker.data.impl.runtime.MSVValidator (implements uk.ac.ebi.adfconverter.tools.checker.data.impl.runtime.XMLSerializer)
- class uk.ac.ebi.adfconverter.library.NameFilter (implements java.io.FilenameFilter)
- class uk.ac.ebi.adfconverter.tools.checker.data.impl.runtime.NamespaceContextImpl (implements uk.ac.ebi.adfconverter.tools.checker.data.impl.runtime.NamespaceContext2)
- class uk.ac.ebi.adfconverter.tools.checker.OptimizedFileChecker
  - class uk.ac.ebi.adfconverter.tools.checker.OptimizedADFChecker
- class uk.ac.ebi.adfconverter.tools.checker.data.impl.runtime.SAXMarshaller (implements uk.ac.ebi.adfconverter.tools.checker.data.impl.runtime.XMLSerializer)
- class uk.ac.ebi.adfconverter.tools.checker.data.impl.runtime.SAXUnmarshallerHandlerImpl (implements uk.ac.ebi.adfconverter.tools.checker.data.impl.runtime.SAXUnmarshallerHandler, uk.ac.ebi.adfconverter.tools.checker.data.impl.runtime.UnmarshallingContext)
- class uk.ac.ebi.adfconverter.common.util.pool.StringBufferPool
- class uk.ac.ebi.adfconverter.common.util.pool.StringPool
- class uk.ac.ebi.adfconverter.tools.checker.data.impl.SubNameTypeImpl (implements uk.ac.ebi.adfconverter.tools.checker.data.SubNameType, uk.ac.ebi.adfconverter.tools.checker.data.impl.runtime.UnmarshallableObject, uk.ac.ebi.adfconverter.tools.checker.data.impl.runtime.ValidatableObject, uk.ac.ebi.adfconverter.tools.checker.data.impl.runtime.XMLSerializable)
- class uk.ac.ebi.adfconverter.tools.checker.data.impl.SubNameTypeImpl.ConstraintsTypeImpl (implements uk.ac.ebi.adfconverter.tools.checker.data.SubNameType.ConstraintsType, uk.ac.ebi.adfconverter.tools.checker.data.impl.runtime.UnmarshallableObject, uk.ac.ebi.adfconverter.tools.checker.data.impl.runtime.ValidatableObject, uk.ac.ebi.adfconverter.tools.checker.data.impl.runtime.XMLSerializable)
- class uk.ac.ebi.adfconverter.tools.checker.data.impl.TableTypeImpl (implements uk.ac.ebi.adfconverter.tools.checker.data.TableType, uk.ac.ebi.adfconverter.tools.checker.data.impl.runtime.UnmarshallableObject, uk.ac.ebi.adfconverter.tools.checker.data.impl.runtime.ValidatableObject, uk.ac.ebi.adfconverter.tools.checker.data.impl.runtime.XMLSerializable)
- class java.lang.Throwable (implements java.io.Serializable)
  - class java.lang.Exception
    - class uk.ac.ebi.adfconverter.tools.exporter.exceptions.ADFExporterInitException
    - class uk.ac.ebi.adfconverter.common.configuration.exceptions.ConfigurationMissingConfException
    - class uk.ac.ebi.adfconverter.common.tools.log.exceptions.ErrorInitLog
    - class uk.ac.ebi.adfconverter.tools.checker.exceptions.IncorrectADFCheckerInitException
    - class uk.ac.ebi.adfconverter.tools.checker.exceptions.IncorrectADFFile
    - class uk.ac.ebi.adfconverter.tools.checker.exceptions.IncorrectADFHeaderFile
    - class uk.ac.ebi.adfconverter.tools.checker.exceptions.IncorrectDataBaseInit
    - class uk.ac.ebi.adfconverter.common.tools.file.reader.exceptions.IncorrectDataFile
    - class uk.ac.ebi.adfconverter.common.data.tabulardata.exceptions.IncorrectDataTableException
    - class uk.ac.ebi.adfconverter.common.tools.file.reader.exceptions.IncorrectFile
    - class uk.ac.ebi.adfconverter.tools.checker.exceptions.IncorrectFileStructure
    - class uk.ac.ebi.adfconverter.tools.checker.ontology.exceptions.IncorrectOntologyException
    - class uk.ac.ebi.adfconverter.tools.checker.ontology.exceptions.IncorrectOntologyFileException
    - class uk.ac.ebi.adfconverter.tools.checker.exceptions.IncorrectSubNameException
    - class java.io.IOException
      - class uk.ac.ebi.adfconverter.common.tools.file.copier.exceptions.FileCopyException
    - class uk.ac.ebi.adfconverter.library.exceptions.LibraryException
    - class uk.ac.ebi.adfconverter.tools.exporter.exceptions.MAGEMLExporterInitException
    - class uk.ac.ebi.adfconverter.tools.checker.exceptions.UnknownStructure
- class uk.ac.ebi.adfconverter.tools.checker.data.impl.runtime.UnmarshallingEventHandlerAdaptor (implements uk.ac.ebi.adfconverter.tools.checker.data.impl.runtime.UnmarshallingEventHandler)
- class uk.ac.ebi.adfconverter.common.tools.file.archives.Untar
- class uk.ac.ebi.adfconverter.common.tools.file.archives.Unzip
- class uk.ac.ebi.adfconverter.tools.checker.data.impl.runtime.Util
- class uk.ac.ebi.adfconverter.tools.checker.data.impl.runtime.ValidatorImpl

Interface Hierarchy

interface uk.ac.ebi.adfconverter.common.tools.file.reader.ADFConverterFileReader
interface uk.ac.ebi.adfconverter.common.tools.file.writer.ADFConverterFileWriter
interface uk.ac.ebi.adfconverter.common.tools.log.ADFConverterLogger
interface uk.ac.ebi.adfconverter.tools.checker.data.CardinalityType
interface uk.ac.ebi.adfconverter.tools.checker.data.CheckRuleType
interface uk.ac.ebi.adfconverter.tools.checker.data.ConstraintType
interface uk.ac.ebi.adfconverter.common.tools.file.reader.DataReader
interface uk.ac.ebi.adfconverter.tools.checker.data.DataType
interface uk.ac.ebi.adfconverter.tools.checker.data.DataType.TablesType
interface uk.ac.ebi.adfconverter.common.tools.file.writer.DataWriter
interface uk.ac.ebi.adfconverter.tools.checker.data.DocumentStructureType
- interface uk.ac.ebi.adfconverter.tools.checker.data.DocumentStructure
interface uk.ac.ebi.adfconverter.tools.checker.data.DocumentStructureType.FilesType
interface uk.ac.ebi.adfconverter.tools.checker.data.FieldType
interface uk.ac.ebi.adfconverter.tools.checker.data.FieldType.ConstraintsType
interface uk.ac.ebi.adfconverter.tools.checker.data.FileType
- interface uk.ac.ebi.adfconverter.tools.checker.data.Filer
interface uk.ac.ebi.adfconverter.tools.checker.data.FileType.DataSetType
interface uk.ac.ebi.adfconverter.tools.checker.data.impl.runtime.GrammarInfo
interface uk.ac.ebi.adfconverter.tools.checker.data.HeaderType
- interface uk.ac.ebi.adfconverter.tools.checker.data.Header
interface uk.ac.ebi.adfconverter.tools.checker.data.HeaderType.ItemsType
interface uk.ac.ebi.adfconverter.tools.checker.data.ItemType
- interface uk.ac.ebi.adfconverter.tools.checker.data.ItemTemp
interface uk.ac.ebi.adfconverter.tools.checker.data.ItemType.FieldDependenceType
interface uk.ac.ebi.adfconverter.tools.checker.data.ItemType.RelaxCheckRulesType
interface uk.ac.ebi.adfconverter.tools.checker.data.ItemType.SubNamesType
interface uk.ac.ebi.adfconverter.tools.checker.data.LocationType
interface uk.ac.ebi.adfconverter.tools.checker.data.LocationType.PreviousColumnsType
interface uk.ac.ebi.adfconverter.tools.checker.data.impl.runtime.NamespaceContext2
interface uk.ac.ebi.adfconverter.tools.checker.data.impl.runtime.PrefixCallback
interface uk.ac.ebi.adfconverter.tools.checker.data.impl.runtime.SAXUnmarshallerHandler
interface uk.ac.ebi.adfconverter.tools.checker.data.SubNameType
interface uk.ac.ebi.adfconverter.tools.checker.data.SubNameType.ConstraintsType
interface uk.ac.ebi.adfconverter.tools.checker.data.TableType
interface uk.ac.ebi.adfconverter.common.tools.file.converter.TextLineConverter
interface uk.ac.ebi.adfconverter.tools.checker.data.impl.runtime.UnmarshallableObject
interface uk.ac.ebi.adfconverter.tools.checker.data.impl.runtime.UnmarshallingContext
interface uk.ac.ebi.adfconverter.tools.checker.data.impl.runtime.UnmarshallingEventHandler
interface uk.ac.ebi.adfconverter.tools.checker.data.impl.runtime.XMLSerializable
- interface uk.ac.ebi.adfconverter.tools.checker.data.impl.runtime.ValidatableObject
interface uk.ac.ebi.adfconverter.tools.checker.data.impl.runtime.XMLSerializer

Overview

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Class

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FRAMES NO FRAMES

European Bioinformatics InstituteMicroarray Informatics Team