Uses of Class
uk.ac.ebi.adfconverter.common.data.DataBuffer

Packages that use DataBuffer
uk.ac.ebi.adfconverter.common.data   
uk.ac.ebi.adfconverter.common.data.tabulardata   
uk.ac.ebi.adfconverter.common.tools.file.converter   
uk.ac.ebi.adfconverter.common.tools.file.reader   
uk.ac.ebi.adfconverter.common.tools.file.writer   
uk.ac.ebi.adfconverter.common.util.pool   
uk.ac.ebi.adfconverter.tools.checker   
uk.ac.ebi.adfconverter.tools.checker.ontology   
 

Uses of DataBuffer in uk.ac.ebi.adfconverter.common.data
 

Methods in uk.ac.ebi.adfconverter.common.data that return DataBuffer
 DataBuffer DataBuffer.concat(DataBuffer buff)
          Concats the current DataBuffer with another databuffer
 DataBuffer DataBuffer.toLowerCase()
          Retrieves the databuffer in lower case
 DataBuffer DataBuffer.toUpperCase()
          Retrieves the databuffer in upper case
 

Methods in uk.ac.ebi.adfconverter.common.data with parameters of type DataBuffer
 DataBuffer DataBuffer.concat(DataBuffer buff)
          Concats the current DataBuffer with another databuffer
 void DataBuffer.append(DataBuffer buff)
          Appends the DataBuffer to the current one Add the String og the databuffer to the end of the current one
 

Uses of DataBuffer in uk.ac.ebi.adfconverter.common.data.tabulardata
 

Methods in uk.ac.ebi.adfconverter.common.data.tabulardata that return DataBuffer
 DataBuffer DataRow.getDataBuffer(int location)
          Retrieves the DataBuffer value contained in the specified location.
 DataBuffer DataRow.getDataBuffer(java.lang.String label)
          Retrieves the DataBuffer value located under specified column label.
 DataBuffer DataRow.getDataBuffer(int location, java.lang.String defaultVal)
          Retrieves the String value contained in the specified location or defaultVal if it does not.
 DataBuffer DataRow.getDataBuffer(java.lang.String label, java.lang.String defaultVal)
          Retrieves the String value contained under the specified column label.
 

Methods in uk.ac.ebi.adfconverter.common.data.tabulardata with parameters of type DataBuffer
 void DataRow.add(DataBuffer datum)
          Adds a DataBuffer datum to the next location in the row
 void DataRow.add(DataBuffer datum, int position)
          Adds a databuffer datum at a given position in the current row
 

Uses of DataBuffer in uk.ac.ebi.adfconverter.common.tools.file.converter
 

Methods in uk.ac.ebi.adfconverter.common.tools.file.converter that return DataBuffer
 DataBuffer TextLineConverter.format(DataRow row)
          Formats the data contained in the DataRow object into a line of data following the text file format.
 DataBuffer TextLineConverter.format(DataTableHeader header)
          Formats the header item list object into a line of data following the text file format.
static DataBuffer DelimiterLineConverter.format(DataRow row)
          Format a DataRow following the current delimiter for output
static DataBuffer DelimiterLineConverter.format(DataTableHeader header)
          Format a DataHeaderRow following the current delimiter for output
 

Methods in uk.ac.ebi.adfconverter.common.tools.file.converter with parameters of type DataBuffer
 DataRow TextLineConverter.convertLine(DataBuffer line)
           Converts a line of data into a DataRow object which contains each data item in individual cells.
 DataRow TextLineConverter.convertLine(DataBuffer line, int length)
           Converts a line of data into a DataRow object which contains each data item in individual cells.
static DataRow DelimiterLineConverter.convertLine(DataBuffer line)
          Splits a String (file data line) following the current delimiter and the current escape characters
static DataRow DelimiterLineConverter.convertLine(DataBuffer line, int length)
          Splits a String (file data line) following the current delimiter and the current escape characters, with a limited number of exporting token in output DataRow
 

Uses of DataBuffer in uk.ac.ebi.adfconverter.common.tools.file.reader
 

Methods in uk.ac.ebi.adfconverter.common.tools.file.reader that return DataBuffer
 DataBuffer WorkBookFileReaderjxl.getLine()
           Retrieves a line from a data file Only when termination requirements have been met, the method should return a String object.
 DataBuffer PlainTextFileReader.getLine()
           Retrieves a line from a data file Only when termination requirements have been met, the method should return a String object.
abstract  DataBuffer ADFConverterFileReaderImpl.getLine()
           Retrieves a line from a data file Only when termination requirements have been met, the method should return a String object.
 DataBuffer ADFConverterFileReader.getLine()
           Retrieves a line from a data file Only when termination requirements have been met, the method should return a String object.
 

Uses of DataBuffer in uk.ac.ebi.adfconverter.common.tools.file.writer
 

Methods in uk.ac.ebi.adfconverter.common.tools.file.writer with parameters of type DataBuffer
 void WorkBookFileWriterjxl.writeLine(DataBuffer line)
           Write a line ina data file Only when termination requirements have been met, the method should return a String object.
 void PlainTextFileWriter.writeLine(DataBuffer line)
           Retrieves a line from a data file Only when termination requirements have been met, the method should return a String object.
abstract  void ADFConverterFileWriterImpl.writeLine(DataBuffer line)
           Write a line in a data file.
 void ADFConverterFileWriter.writeLine(DataBuffer line)
           Write a line in a data file
 

Uses of DataBuffer in uk.ac.ebi.adfconverter.common.util.pool
 

Methods in uk.ac.ebi.adfconverter.common.util.pool that return DataBuffer
static DataBuffer DataBufferPool.getString()
          Retrieved a previous initialised/ created object from the pool.
 

Methods in uk.ac.ebi.adfconverter.common.util.pool with parameters of type DataBuffer
static void DataBufferPool.returnString(DataBuffer sb)
          Returns a no more needed object to the pool for reuse.
 

Uses of DataBuffer in uk.ac.ebi.adfconverter.tools.checker
 

Methods in uk.ac.ebi.adfconverter.tools.checker that return DataBuffer
static DataBuffer DatabaseChecker.checkDBTag(ADFConverterLogger log, DataBuffer tag, boolean doCuration, java.util.ArrayList userDefinedTags, boolean isStrictChecking)
          Checks if a DB tag is an approved Databases or a userdefined one.
 

Methods in uk.ac.ebi.adfconverter.tools.checker with parameters of type DataBuffer
static DataBuffer DatabaseChecker.checkDBTag(ADFConverterLogger log, DataBuffer tag, boolean doCuration, java.util.ArrayList userDefinedTags, boolean isStrictChecking)
          Checks if a DB tag is an approved Databases or a userdefined one.
 

Uses of DataBuffer in uk.ac.ebi.adfconverter.tools.checker.ontology
 

Methods in uk.ac.ebi.adfconverter.tools.checker.ontology with parameters of type DataBuffer
 boolean MGEDOntologyChecker.checkontologyTerm(ADFConverterLogger log, java.lang.String type, DataBuffer value)
          Check if a term belong to the MGED ontology
 



European Bioinformatics InstituteMicroarray Informatics Team