Uses of Interface
uk.ac.ebi.adfconverter.common.tools.log.ADFConverterLogger

Packages that use ADFConverterLogger

uk.ac.ebi.adfconverter.common.tools.log
uk.ac.ebi.adfconverter.tools.checker
uk.ac.ebi.adfconverter.tools.checker.ontology

Uses of ADFConverterLogger in uk.ac.ebi.adfconverter.common.tools.log

Classes in uk.ac.ebi.adfconverter.common.tools.log that implement ADFConverterLogger

class

ADFConverterLoggerImpl Implements tool logger using Log4J API.

Uses of ADFConverterLogger in uk.ac.ebi.adfconverter.tools.checker

Methods in uk.ac.ebi.adfconverter.tools.checker with parameters of type ADFConverterLogger

static DataBuffer	DatabaseChecker.checkDBTag(ADFConverterLogger log, DataBuffer tag, boolean doCuration, java.util.ArrayList userDefinedTags, boolean isStrictChecking) Checks if a DB tag is an approved Databases or a userdefined one.
static boolean	DatabaseChecker.checkDBAccNumber(ADFConverterLogger log, java.lang.String tag, java.lang.String AccNumber) Checks if an Accession is correct (regex matching) according to the database tag additional information will be added during MAGE object creation

Uses of ADFConverterLogger in uk.ac.ebi.adfconverter.tools.checker.ontology

Methods in uk.ac.ebi.adfconverter.tools.checker.ontology with parameters of type ADFConverterLogger

boolean	MGEDOntologyChecker.checkontologyTerm(ADFConverterLogger log, java.lang.String type, DataBuffer value) Check if a term belong to the MGED ontology
boolean	MGEDOntologyChecker.checkOntologyEntry(ADFConverterLogger log, Extendable MAGEobj, OntologyEntry oentry, java.lang.String link) Check the ontology term in a an OntologyEntry