uk.ac.ebi.adfconverter.data.adf
Class ADFCompositeSequence

java.lang.Object
  uk.ac.ebi.adfconverter.common.data.tabulardata.DataRow
      uk.ac.ebi.adfconverter.data.adf.ADFDesignElement
          uk.ac.ebi.adfconverter.data.adf.ADFCompositeSequence

public class ADFCompositeSequence

extends ADFDesignElement

This class represents a CompositeSequence, from ADF data, in the tool.

Since:

11 janv. 2005

Version:

1

Author:

Pierre MARGUERITE

See Also:

ADFDesignElement

Constructor Summary

ADFCompositeSequence()
Default ADFCompositeSequence class Constructor Inits associated biosequence, reporter, composite sequence and group lists

ADFCompositeSequence(int capacity)
ADFCompositeSequence class Constructor with a given capacity (to limit memory usage) Inits associated biosequence, reporter, composite sequence and group lists

Method Summary

void	addCompositeSequence(ADFCompositeSequence comp) add an associated compositeSequence to the current CompositeSequence
void	addCompositeSequencegroup(ADFCompositeSequenceGroup group) add CompositeSequenceGroup associated to the compositeSequence
void	addReporter(ADFReporter rep) Associates a reporter to the current object
java.util.ArrayList	getCompositeSequencegroups() retrieves CompositeSequenceGroup associated to the compositeSequence
java.util.ArrayList	getCompositeSequences() retrieves compositeSequences associated to the compositeSequence
java.util.ArrayList	getReporters() retrieves reporters associated to the compositeSequence

Methods inherited from class uk.ac.ebi.adfconverter.data.adf.ADFDesignElement

addBioSequence, getBioSequences, getGroups, setGroups, toString

Methods inherited from class uk.ac.ebi.adfconverter.common.data.tabulardata.DataRow

add, add, add, add, add, add, addEmpty, clear, equals, getDataBuffer, getDataBuffer, getDataBuffer, getDataBuffer, getDate, getDate, getDouble, getDouble, getDouble, getDouble, getDouble, getHeaderIndex, getInt, getInt, getInt, getInt, getInt, getLineNumber, getString, getString, getString, getString, getStringBuffer, getStringBuffer, getStringBuffer, getStringBuffer, getStringChecking, isEmpty, setHeaderIndex, setLineNumber, size, toArrayList

Methods inherited from class java.lang.Object

getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

ADFCompositeSequence

public ADFCompositeSequence()

Default ADFCompositeSequence class Constructor Inits associated biosequence, reporter, composite sequence and group lists

ADFCompositeSequence

public ADFCompositeSequence(int capacity)

ADFCompositeSequence class Constructor with a given capacity (to limit memory usage) Inits associated biosequence, reporter, composite sequence and group lists

Parameters:

capacity - ADFCompositeSequence object capacity

Method Detail

addCompositeSequence

public void addCompositeSequence(ADFCompositeSequence comp)

add an associated compositeSequence to the current CompositeSequence

Parameters:

comp - the Composite Sequence to associate

addCompositeSequencegroup

public void addCompositeSequencegroup(ADFCompositeSequenceGroup group)

add CompositeSequenceGroup associated to the compositeSequence

Parameters:

group - a group of CompositeSequences

addReporter

public void addReporter(ADFReporter rep)

Associates a reporter to the current object

Parameters:

rep - the reporter to associate

getCompositeSequencegroups

public java.util.ArrayList getCompositeSequencegroups()

retrieves CompositeSequenceGroup associated to the compositeSequence

Returns:

an arraylist of Group

getCompositeSequences

public java.util.ArrayList getCompositeSequences()

retrieves compositeSequences associated to the compositeSequence

Returns:

an arraylist of compositeSequence

getReporters

public java.util.ArrayList getReporters()

retrieves reporters associated to the compositeSequence

Returns:

an arraylist of reporters