uk.ac.ebi.adfconverter.data.adf
Class ADFDesignElement

java.lang.Object
  uk.ac.ebi.adfconverter.common.data.tabulardata.DataRow
      uk.ac.ebi.adfconverter.data.adf.ADFDesignElement

Direct Known Subclasses:

ADFCompositeSequence, ADFReporter

public class ADFDesignElement

extends DataRow

Class Representing a Design element from ADF in the tool Each ADFDesignElement has associated biosequences

Since:

01 08 2004

Version:

$Revision: 1 $

Author:

Pierre MARGUERITE

See Also:

DataRow

Constructor Summary

ADFDesignElement()
Default Constructor Inits associated biosequence group lists

ADFDesignElement(int capacity)
Constructor with a default object capacity

Method Summary

void	addBioSequence(ADFBioSequence biosequence) sets biosequences associated to the reporter
java.util.ArrayList	getBioSequences() retrieves biosequences associated to the reporter
java.util.ArrayList	getGroups() retrieves Group associated to the design element
void	setGroups(ADFReporterGroup group) sets a group associated to the design element
java.lang.String	toString() Represents the group as String (non-Javadoc)

Methods inherited from class uk.ac.ebi.adfconverter.common.data.tabulardata.DataRow

add, add, add, add, add, add, addEmpty, clear, equals, getDataBuffer, getDataBuffer, getDataBuffer, getDataBuffer, getDate, getDate, getDouble, getDouble, getDouble, getDouble, getDouble, getHeaderIndex, getInt, getInt, getInt, getInt, getInt, getLineNumber, getString, getString, getString, getString, getStringBuffer, getStringBuffer, getStringBuffer, getStringBuffer, getStringChecking, isEmpty, setHeaderIndex, setLineNumber, size, toArrayList

Methods inherited from class java.lang.Object

getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

ADFDesignElement

public ADFDesignElement()

Default Constructor Inits associated biosequence group lists

ADFDesignElement

public ADFDesignElement(int capacity)

Constructor with a default object capacity

Parameters:

capacity - initial object capacity

Method Detail

addBioSequence

public void addBioSequence(ADFBioSequence biosequence)

sets biosequences associated to the reporter

Parameters:

biosequence - a bioSequence

getBioSequences

public java.util.ArrayList getBioSequences()

retrieves biosequences associated to the reporter

Returns:

an arraylist of bioSequences

getGroups

public java.util.ArrayList getGroups()

retrieves Group associated to the design element

Returns:

an arraylist of Group

setGroups

public void setGroups(ADFReporterGroup group)

sets a group associated to the design element

Parameters:

group - a Group of design element

toString

public java.lang.String toString()

Represents the group as String (non-Javadoc)

Overrides:

toString in class DataRow

Returns:

String representation of data row.

See Also:

Object.toString()