uk.ac.ebi.adfconverter.data.adf
Class ADFReporter

java.lang.Object
  uk.ac.ebi.adfconverter.common.data.tabulardata.DataRow
      uk.ac.ebi.adfconverter.data.adf.ADFDesignElement
          uk.ac.ebi.adfconverter.data.adf.ADFReporter

public class ADFReporter

extends ADFDesignElement

This class represents an ADF reporter in the tool. As MAGE-OM, it is an ADFDesignElement and can be related to several CompositeSequences and Biosequences. It can belong to ReporterGroups as well.

Since:

19 sept. 2005

Version:

1

Author:

Pierre MARGUERITE

Constructor Summary

ADFReporter()
Default ADFReporter class Constructor; Inits associated objects lists ( biosequences, CompositeSequence, groups)

ADFReporter(int capacity)
ADFReporter Constructor with a given row capacity (maximal number of data) Inits associated objects lists ( biosequences, CompositeSequence, groups)

Method Summary

void	addCompositeSequences(ADFCompositeSequence comp) sets a compositeSequence associated to the reporter
java.util.ArrayList	getCompositeSequences() retrieves compositeSequences associated to the reporter
java.util.ArrayList	getReportergroups() retrieves ReporterGroup associated to the reporter
void	setReportergroups(ADFReporterGroup group) sets a ReporterGroup associated to the reporter

Methods inherited from class uk.ac.ebi.adfconverter.data.adf.ADFDesignElement

addBioSequence, getBioSequences, getGroups, setGroups, toString

Methods inherited from class uk.ac.ebi.adfconverter.common.data.tabulardata.DataRow

add, add, add, add, add, add, addEmpty, clear, equals, getDataBuffer, getDataBuffer, getDataBuffer, getDataBuffer, getDate, getDate, getDouble, getDouble, getDouble, getDouble, getDouble, getHeaderIndex, getInt, getInt, getInt, getInt, getInt, getLineNumber, getString, getString, getString, getString, getStringBuffer, getStringBuffer, getStringBuffer, getStringBuffer, getStringChecking, isEmpty, setHeaderIndex, setLineNumber, size, toArrayList

Methods inherited from class java.lang.Object

getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

ADFReporter

public ADFReporter()

Default ADFReporter class Constructor; Inits associated objects lists ( biosequences, CompositeSequence, groups)

ADFReporter

public ADFReporter(int capacity)

ADFReporter Constructor with a given row capacity (maximal number of data) Inits associated objects lists ( biosequences, CompositeSequence, groups)

Parameters:

capacity - the initial ADFReporter capacity

Method Detail

addCompositeSequences

public void addCompositeSequences(ADFCompositeSequence comp)

sets a compositeSequence associated to the reporter

Parameters:

comp - a composite sequence associated to the reporter

getCompositeSequences

public java.util.ArrayList getCompositeSequences()

retrieves compositeSequences associated to the reporter

Returns:

an arraylist of Group

getReportergroups

public java.util.ArrayList getReportergroups()

retrieves ReporterGroup associated to the reporter

Returns:

an arraylist of Group

setReportergroups

public void setReportergroups(ADFReporterGroup group)

sets a ReporterGroup associated to the reporter

Parameters:

group - a Group of reporter