uk.ac.ebi.adfconverter.tools.converter
Class ADFToMAGEConverter

java.lang.Object
  uk.ac.ebi.adfconverter.tools.converter.ADFToMAGEConverter

public class ADFToMAGEConverter

extends java.lang.Object

Convert ADF data in MAGE objects. From a ADFJava object, a MAGEJava is obtained. It contained only arra design data. -> Array, ArrayDesign,DesignElement, Feature, Reporter, CompositeSequence, BioSequence

Version:

1 10 August 2004

Author:

Pierre MARGUERITE

Constructor Summary

ADFToMAGEConverter()
Constructor of the ADFToMAGEConvert class inits list of contract attributes

ADFToMAGEConverter(java.util.Properties converterProperties)
Constructor of the ADFToMAGEConvert class with additional properties for the converter for class initialisation

Method Summary

MAGEJava	ConvertToMAGE(ADFJava adf) Method for ADF to MAGE object conversion First step before the MAGE-ML
void	exportIdentifier(java.io.File adfFile) Export identifiers to a file.

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ADFToMAGEConverter

public ADFToMAGEConverter()

Constructor of the ADFToMAGEConvert class inits list of contract attributes

ADFToMAGEConverter

public ADFToMAGEConverter(java.util.Properties converterProperties)

Constructor of the ADFToMAGEConvert class with additional properties for the converter for class initialisation

Parameters:

converterProperties -

Method Detail

ConvertToMAGE

public MAGEJava ConvertToMAGE(ADFJava adf)

Method for ADF to MAGE object conversion First step before the MAGE-ML

Parameters:

adf - the ADF convert to MAGE

Returns:

the MAGEJava object presenting the ADF as MAGE

exportIdentifier

public void exportIdentifier(java.io.File adfFile)
                      throws java.io.IOException

Export identifiers to a file. The file will name of the name of ADF file followed by"_identifiers_" with the ".txt" file extension

Parameters:

adfFile - the file object corresponding to the ADF containing data

Throws:

java.io.IOException - if an error occurs during identifier exporting (file access).